sibsim4
align expressed RNA sequences on a DNA template
Description
The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals: * speed improvement;
* allow large, chromosome scale, DNA sequences to be used;
* provide more detailed output about splice types;
* provide more detailed output about polyA sites;
* misc code cleanups and fixes.
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Homepage
http://sibsim4.sourceforge.net/
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