rapid haploid variant calling and core genome alignment
DescriptionSnippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use as many CPUs as you can give it on a single computer (tested to 64 cores). It is designed with speed in mind, and produces a consistent set of output files in a single folder. It can then take a set of Snippy results using the same reference and generate a core SNP alignment (and ultimately a phylogenomic tree).
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Install this software package
If the package is available for the distribution you are currently using on your computer then install the software by clicking on…Install snippy