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genomics application for assembling millions of very short DNA sequences


The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.

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1505 other people were interested in this package here. The newest known version of this software is 4.0-3 (Information last updated about 6 hours ago.)