ssake

genomics application for assembling millions of very short DNA sequences

Description

The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.

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Homepage

http://www.bcgsc.ca/platform/bioinfo/software/ssake


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Install ssake