sspace

Description

SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension (SSPACE) is a script able to extend and scaffold pre-assembled contigs using one or more mate pairs or paired-end libraries, or even a combination.

SSPACE is built based on SSAKE. Code of SSAKE is changed to be able to extend and scaffold pre-assembled contigs for multiple paired reads libraries.

This is the free 'basic' version of SSPACE. The non-free 'standard' version is available directly from Baseclear.

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Homepage

https://github.com/nsoranzo/sspace_basic

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Install sspace