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pipeline for building loci from short-read DNA sequences


Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

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1638 other people were interested in this package here. The newest known version of this software is 2.55+dfsg-1 (Information last updated about 7 hours ago.)