stringtie
assemble short RNAseq reads to transcripts
Description
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts. StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.Upload more screenshots
Please help extend the collection of screenshots. Just make a screenshot and upload it here. You don't need to register or anything.
Upload a screenshotHint: upload an image here from your clipboard with Ctrl-V
Homepage
https://ccb.jhu.edu/software/stringtie/
Install this software package
If the package is available for the distribution you are currently using on your computer then install the software by clicking on…
Install stringtie