subread

toolkit for processing next-gen sequencing data

Description

Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments.

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Homepage

http://sourceforge.net/projects/subread/


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Install subread