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fast splice junction mapper for RNA-Seq reads


TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

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2510 other people were interested in this package here. The newest known version of this software is 2.1.1+dfsg1-2+b1 (Information last updated 2 days ago.)