twopaco
build the compacted de Bruijn graph from many complete genomes
Description
TwoPaCo is an implementation of the algorithm described in the paper "TwoPaCo: An efficient algorithm to build the compacted de Bruijn graph from many complete genomes". This package contains two programs: twopaco: tool for direct construction of the compressed graph from
multiple complete genomes
graphdump: utility that turns output of twopaco into a text format
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Homepage
https://github.com/medvedevgroup/TwoPaCo
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Install twopaco