vcfanno-examples
examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files
Description
Vcfanno allows you to quickly annotate your VCF with any number of INFO fields from any number of VCFs or BED files. It uses a simple conf file to allow the user to specify the source annotation files and fields and how they will be added to the info of the query VCF. * For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
This package contains a test data set as well as sample scripts
running some test suite provided by Debian also as autopkgtest.Upload more screenshots
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Homepage
https://github.com/brentp/vcfanno
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