processing sequence alignments in SAM, BAM and CRAM formats

samtools

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.
RXVT-like terminal emulator with Unicode and 256-color support

rxvt-unicode

RXVT-like terminal emulator with Unicode and 256-color support

rxvt-unicode is a modern, Unicode-aware color xterm replacement that uses significantly less memory than a conventional xterm and many other Unicode supporting terminal emulators.
Simple text editor forked from Leafpad

l3afpad

Simple text editor forked from Leafpad

simple GTK+ text editor that emphasizes simplicity. As development focuses on keeping weight down to a minimum, only the most essential features are implemented in the editor. L3afpad is simple to use, is easily compiled, requires few libraries, and starts up quickly.
ffmpeg -i DSC_0716_bird.MOV out2.mkv (mov-to-mkv, 6 from6) - O'key

ardour-video-timeline

digital audio workstation - video timeline

Ardour is a multichannel hard disk recorder (HDR) and digital audio workstation (DAW). It can be used to control, record, edit and run complex audio setups.
Utility to work with AppStream metadata

appstream-util

Utility to work with AppStream metadata

AppStream is a cross-distribution effort for creating and sharing metadata about software components available in the package repositories of a distribution.
commandline package manager

apt

commandline package manager

This package provides commandline tools for searching and managing as well as querying information about packages as a low-level access to all features of the libapt-pkg library.