pplacer
phylogenetic placement and downstream analysis
Pplacer places reads on a phylogenetic tree. guppy (Grand Unified
Phylogenetic Placement Yanalyzer) yanalyzes them. rppr is a helpful tool
for working with reference packages.
python3-compose
Python implementation of docker-compose file specification
docker-compose is a service management software built on top of docker. Define
your services and their relationships in a simple YAML file, and let compose
handle the rest.
readucks
Nanopore read de-multiplexer (read demux -> readux -> readucks, innit)
This package is inspired by the demultiplexing options in
porechop but without the adapter trimming options - it just demuxes.
It uses the parasail library with its Python bindings to do
pairwise alignment which provides a considerable speed up over
the seqan library used by porechop due to its low-level use
of vector processor instructions.
elpa-xcscope
Interactively examine a C program source in emacs
Cscope is a program that generates index tables from C and C++ source
files. It is also a client program that knows how to use the
generated index tables to answer questions such as where is a symbol
defined, where is a symbol referenced, etc.
libghc-rio-orphans-prof
Orphan instances for the RIO type in the rio package; profiling libraries
This Haskell library provides orphan instances for the `RIO` data type.
Currently supports:
libghc-casa-types-prof
types for Casa; profiling libraries
This Haskell library implements types for Casa, a Content-Addressable
Storage Archive provided by FP Complete.