r-bioc-sva
GNU R Surrogate Variable Analysis
The sva package contains functions for removing batch
effects and other unwanted variation in high-throughput
experiment. Specifically, the sva package contains functions
for the identifying and building surrogate variables for
high-dimensional data sets. Surrogate variables are covariates
constructed directly from high-dimensional data (like gene
expression/RNA sequencing/methylation/brain imaging data) that
can be used in subsequent analyses to adjust for unknown,
unmodeled, or latent sources of noise. The sva package can be
used to remove artifacts in three ways: (1) identifying and
estimating surrogate variables for unknown sources of variation
in high-throughput experiments (Leek and Storey 2007 PLoS
Genetics,2008 PNAS), (2) directly removing known batch
effects using ComBat (Johnson et al. 2007 Biostatistics) and (3) removing
batch effects with known control probes (Leek 2014 biorXiv).
Removing batch effects and using surrogate variables in
differential expression analysis have been shown to reduce
dependence, stabilize error rate estimates, and improve
reproducibility, see (Leek and Storey 2007 PLoS Genetics, 2008
PNAS or Leek et al. 2011 Nat. Reviews Genetics).
libn32stdc++-10-dev-mips-cross
GNU Standard C++ Library v3 (development files) (mips
This package contains the headers and static library files necessary for
building C++ programs which use libstdc++.
libost-bindings2.0
Open-Source Computational Structural Biology Framework
postgresql-13-cron
Run periodic jobs in PostgreSQL
pg_cron is a simple cron-based job scheduler for PostgreSQL (9.5 or higher)
that runs inside the database as an extension. It uses the same syntax as
regular cron, but it allows you to schedule PostgreSQL commands directly from
the database. pg_cron can run multiple jobs in parallel, but it runs at most
one instance of a job at a time. If a second run is supposed to start before
the first one finishes, then the second run is queued and started as soon as
the first run completes.
python3-userpath
tool for adding locations to the user PATH - Python3 library
userpath is a command-line tool and Python library
to add custom locations to user PATH.
Only user-specific PATH is changed,
avoiding the need for elevated privileges.
libextractor-plugin-gstreamer
extracts meta-data from files of arbitrary type (GStreamer plugin)
GNU libextractor provides developers of file-sharing networks, file managers,
and WWW-indexing bots with a universal library to obtain meta-data about files.