r-bioc-sva

GNU R Surrogate Variable Analysis

The sva package contains functions for removing batch effects and other unwanted variation in high-throughput experiment. Specifically, the sva package contains functions for the identifying and building surrogate variables for high-dimensional data sets. Surrogate variables are covariates constructed directly from high-dimensional data (like gene expression/RNA sequencing/methylation/brain imaging data) that can be used in subsequent analyses to adjust for unknown, unmodeled, or latent sources of noise. The sva package can be used to remove artifacts in three ways: (1) identifying and estimating surrogate variables for unknown sources of variation in high-throughput experiments (Leek and Storey 2007 PLoS Genetics,2008 PNAS), (2) directly removing known batch effects using ComBat (Johnson et al. 2007 Biostatistics) and (3) removing batch effects with known control probes (Leek 2014 biorXiv). Removing batch effects and using surrogate variables in differential expression analysis have been shown to reduce dependence, stabilize error rate estimates, and improve reproducibility, see (Leek and Storey 2007 PLoS Genetics, 2008 PNAS or Leek et al. 2011 Nat. Reviews Genetics).

libn32stdc++-10-dev-mips-cross

GNU Standard C++ Library v3 (development files) (mips

This package contains the headers and static library files necessary for building C++ programs which use libstdc++.

libost-bindings2.0

Open-Source Computational Structural Biology Framework

postgresql-13-cron

Run periodic jobs in PostgreSQL

pg_cron is a simple cron-based job scheduler for PostgreSQL (9.5 or higher) that runs inside the database as an extension. It uses the same syntax as regular cron, but it allows you to schedule PostgreSQL commands directly from the database. pg_cron can run multiple jobs in parallel, but it runs at most one instance of a job at a time. If a second run is supposed to start before the first one finishes, then the second run is queued and started as soon as the first run completes.

python3-userpath

tool for adding locations to the user PATH - Python3 library

userpath is a command-line tool and Python library to add custom locations to user PATH. Only user-specific PATH is changed, avoiding the need for elevated privileges.

libextractor-plugin-gstreamer

extracts meta-data from files of arbitrary type (GStreamer plugin)

GNU libextractor provides developers of file-sharing networks, file managers, and WWW-indexing bots with a universal library to obtain meta-data about files.