clang-tidy-12

clang-based C++ linter tool

Provide an extensible framework for diagnosing and fixing typical programming errors, like style violations, interface misuse, or bugs that can be deduced via static analysis. clang-tidy is modular and provides a convenient interface for writing new checks.

cat-bat

taxonomic classification of contigs and metagenome-assembled genomes (MAGs)

Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formatted appropriately.

bioperl

Perl tools for computational molecular biology

The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. It is well-accepted throughout the community and used in many high-profile projects, e.g., Ensembl.

librte-raw-dpaa2-cmdif23

Data Plane Development Kit (librte-raw-dpaa2-cmdif runtime library)

DPDK is a set of libraries for fast packet processing. Applications run in user-space and communicate directly with dedicated network interfaces.

librte-rawdev23

Data Plane Development Kit (librte-rawdev runtime library)

DPDK is a set of libraries for fast packet processing. Applications run in user-space and communicate directly with dedicated network interfaces.

php8.0-mbstring

MBSTRING module for PHP

This package provides the MBSTRING module(s) for PHP.