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gasic

genome abundance similarity correction

Description

One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods.

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Homepage

http://sourceforge.net/projects/gasic/


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565 other people were interested in this package here. The newest known version of this software is 0.0.r19-4 (Information last updated about 23 hours ago.)