Debian logoDebian Screenshots >

idba

iterative De Bruijn Graph short read assemblers

Description

IDBA-Tran is an iterative De Bruijn Graph De Novo short read assembler for transcriptome. It is purely de novo assembler based on only RNA sequencing reads. IDBA-Tran uses local assembly to reconstructing missing k-mers in low-expressed transcripts and then employs progressive cutoff on contigs to separate the graph into components. Each component corresponds to one gene in most cases and contains not many transcripts. A heuristic algorithm based on pair-end reads is then used to find the isoforms.

Upload more screenshots

Please help extend the collection of screenshots. Just make a screenshot and upload it here. You don't need to register or anything.


Homepage

https://github.com/loneknightpy/idba


Statistics

686 other people were interested in this package here. The newest known version of this software is 1.1.3-3 (Information last updated 2 days ago.)