mlv-smile

Find statistically significant patterns in sequences

Description

Smile determines sequence motifs on the basis of a set of DNA, RNA or protein sequences.

* No hard limit on the number of combinations of motifs to describe

subsets of sequences.

* The sequence alphabet may be specified.

* The use of wildcards is supported.

* Better determination of significance of motifs by simulation.

* Introduction of a set of sequences with negative controls

that should not match automatically determined motifs.

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