python3-biotools

Python3 bioinformatics utilities for high-throughput genomic sequencing

Description

This package contains utilities like

biotools.align - align sequences (hybrid between Needleman-Wunsch and

Smith-Waterman which is used to find the subsequence

within a larger sequence that best aligns to a reference)

biotools.annotation - create annotation files. The annotations can be used

to create a hierarchy among the annotations

biotools.BLAST - manage BLAST databases and interface with the BLAST+

standalone program available from NCBI.

biotools.clustal - interface to clustalw global (multiple nucleotide or

peptide sequence alignment)

biotools.complement - creates the complement of a sequence, which can then be

reversed

biotools.sequence - various tools to deal with sequences

biotools.translate - translate a nucleotide using the standard genetic code

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