python3-pbcommand

common command-line interface for Pacific Biosciences analysis modules

Description

To integrate with the pbsmrtpipe workflow engine, one must to be able to generate a Tool Contract and to be able to run from a Resolved Tool Contract. A Tool Contract contains the metadata of the exe, such as the file types of inputs, outputs and options. There are two principal use cases, first wrapping/calling Python functions that have been defined in external Python 3 packages, or scripts. Second, creating a CLI tool that supports emitting tool contracts, running resolved tool contracts and complete argparse-style CLI.

Upload more screenshots

Please help extend the collection of screenshots. Just make a screenshot and upload it here. You don't need to register or anything.

Upload a screenshot

Hint: upload an image here from your clipboard with Ctrl-V


Homepage

https://pbcommand.readthedocs.org/en/latest/


Install this software package

If the package is available for the distribution you are currently using on your computer then install the software by clicking on…

Install python3-pbcommand

Cookies help us deliver our services. By using our services, you agree to our use of cookies. Learn more