python3-pdbfixer

Fix problems in Protein Data Bank files (Python 3)

Description

PDBFixer is an application for fixing problems in Protein Data Bank files in preparation for simulating them. It can automatically fix the following problems:

 - Add missing heavy atoms.
 - Add missing hydrogen atoms.
 - Build missing loops.
 - Convert non-standard residues to their standard equivalents.
 - Select a single position for atoms with multiple alternate positions listed.
 - Delete unwanted chains from the model.
 - Delete unwanted heterogens.
 - Build a water box for explicit solvent simulations.

This package installs the library for Python 3.

Upload more screenshots

Please help extend the collection of screenshots. Just make a screenshot and upload it here. You don't need to register or anything.

Upload a screenshot

Hint: upload an image here from your clipboard with Ctrl-V


Homepage

https://github.com/openmm/pdbfixer


Install this software package

If the package is available for the distribution you are currently using on your computer then install the software by clicking on…

Install python3-pdbfixer