sourmash
tools for comparing DNA sequences with MinHash sketches
Description
Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences. MinHash sketches provide a lightweight way to store “signatures” of large DNA or RNA sequence collections, and then compare or search them using a Jaccard index. MinHash sketches can be used to identify samples, find similar samples, identify data sets with shared sequences, and build phylogenetic trees (Ondov et al. 2015). sourmash provides a command line script, a Python library, and a CPython module for MinHash sketches. These tools provide functionality previously handled by the 'khmer' package.Upload more screenshots
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Homepage
https://github.com/dib-lab/sourmash
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