spades

genome assembler for single-cell and isolates data sets

Description

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

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Homepage

http://cab.spbu.ru/software/spades/


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