Phylogenetic Tree Summarization and Annotation


SumTrees is a program to summarize non-parameteric bootstrap or Bayesian posterior probability support for splits or clades on phylogenetic trees.

The basis of the support assessment is typically given by a set of non-parametric bootstrap replicate tree samples produced by programs such as GARLI or RAxML, or by a set of MCMC tree samples produced by programs such as Mr. Bayes or BEAST. The proportion of trees out of the samples in which a particular split is found is taken to be the degree of support for that split as indicated by the samples. The samples that are the basis of the support can be distributed across multiple files, and a burn-in option allows for an initial number of trees in each file to be excluded from the analysis if they are not considered to be drawn from the true support distribution.

Upload more screenshots

Please help extend the collection of screenshots. Just make a screenshot and upload it here. You don't need to register or anything.

Upload a screenshot

Hint: upload an image here from your clipboard with Ctrl-V


Install this software package

If the package is available for the distribution you are currently using on your computer then install the software by clicking on…

Install sumtrees