Debian logoDebian Screenshots >

trimmomatic

flexible read trimming tool for Illumina NGS data

flexible read trimming tool for Illumina NGS data
from version 0.32+dfsg-1

Description

Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.

The current trimming steps are:
 * ILLUMINACLIP: Cut adapter and other illumina-specific sequences from
   the read.
 * SLIDINGWINDOW: Perform a sliding window trimming, cutting once thes
   average quality within the window falls below a threshold.
 * LEADING: Cut bases off the start of a read, if below a threshold quality
 * TRAILING: Cut bases off the end of a read, if below a threshold quality
 * CROP: Cut the read to a specified length
 * HEADCROP: Cut the specified number of bases from the start of the read
 * MINLENGTH: Drop the read if it is below a specified length
 * TOPHRED33: Convert quality scores to Phred-33
 * TOPHRED64: Convert quality scores to Phred-64
It works with FASTQ (using phred + 33 or phred + 64 quality scores, depending on the Illumina pipeline used), either uncompressed or gzipp'ed FASTQ. Use of gzip format is determined based on the .gz extension.

Upload more screenshots

Please help extend the collection of screenshots. Just make a screenshot and upload it here. You don't need to register or anything.


Homepage

http://www.usadellab.org/cms/index.php?page=trimmomatic


Statistics

4401 other people were interested in this package here. The newest known version of this software is 0.39+dfsg-1 (Information last updated about 8 hours ago.)