vg
tools for working with genome variation graphs
Description
variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of: - nodes, which are labeled by sequences and ids
- edges, which connect two nodes via either of their respective ends
- paths, describe genomes, sequence alignments, and annotations (such as gene
models and transcripts) as walks through nodes connected by edges
This model is similar to a number of sequence graphs that have been used in
assembly and multiple sequence alignment. Paths provide coordinate systems
relative to genomes encoded in the graph, allowing stable mappings to be
produced even if the structure of the graph is changed.Upload more screenshots
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Homepage
https://github.com/vgteam/vg#vg
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