read simulator nanopore DRS datasets


Yanosim has three options:

1. yanosim model:
   Creates an model of mismatches, insertions and deletions
   based on an alignment of nanopore DRS reads to a
   reference. Reads should be aligned to a transcriptome
   i.e. without spliced alignment, using minimap2. They
   should have the cs tag.
2. yanosim quantify:
   Quantify the number of reads mapping to each
   transcript in a reference, so that the right number
   of reads can be simulated.
3. yanosim simulate:
   Given a model created using yanosim model, and
   per-transcript read counts created using yanosim
   simulate, simulate error-prone long-reads from the
   given fasta file.

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Install yanosim