yanosim

read simulator nanopore DRS datasets

Description

Yanosim has three options:

1. yanosim model:

Creates an model of mismatches, insertions and deletions

based on an alignment of nanopore DRS reads to a

reference. Reads should be aligned to a transcriptome

i.e. without spliced alignment, using minimap2. They

should have the cs tag.

2. yanosim quantify:

Quantify the number of reads mapping to each

transcript in a reference, so that the right number

of reads can be simulated.

3. yanosim simulate:

Given a model created using yanosim model, and

per-transcript read counts created using yanosim

simulate, simulate error-prone long-reads from the

given fasta file.

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