plasmidseeker

identification of known plasmids from whole-genome sequencing reads

PlasmidSeeker is a k-mer based program for the identification of known plasmids from bacterial whole genome sequencing reads.

critcl

compiled runtime in Tcl

Critcl takes a snippet of C, generates Tcl interface, sends it to the compiler, and then dynamically links the code. Checksums are used to only recompile when needed, so the build overhead really applies only once.

libosmosccp0t64

Library for Signalling Connection Control Part (SCCP)

SCCP is a network layer protocol that provides extended routing, flow control, segmentation, connection-orientation, and error correction facilities in Signaling System 7 telecommunications networks. It is heavily used in cellular networks such as GSM.

rockhopper

system for analyzing bacterial RNA-seq data

Rockhopper is a comprehensive and user-friendly system for computational analysis of bacterial RNA-seq data. As input, Rockhopper takes RNA sequencing reads output by high-throughput sequencing technology (FASTQ, QSEQ, FASTA, SAM, or BAM files). Rockhopper supports the following tasks:

rover

text-based light-weight frontend for update-alternatives

Rover is a text-based light-weight frontend for update-alternatives, which is inspired by the ranger file browser. Compared to existing graphical frontends such as galternatives and kalternatives, Rover still has the following advantages: 1. User doesn't need to move hand off the keyboard. 2. Zero GUI overhead, and not bound to graphical environment. 3. Supports searching by substring or Python regex.

libstring-template-maven-plugin-java

StringTemplate Maven Plugin

This plugin allows one to execute StringTemplate template files during a Maven build. The values for templates can come from static declarations or from a Java class specified to be executed.