r-bioc-isoformswitchanalyzer
Identify, Annotate and Visualize Alternative Splicing and
Isoform Switches with Functional Consequences from both short- and
long-read RNA-seq data. Analysis of alternative splicing and
isoform switches with predicted functional consequences (e.g.
gain/loss of protein domains etc.) from quantification of all
types of RNASeq by tools such as Kallisto, Salmon, StringTie,
Cufflinks/Cuffdiff etc.
r-cran-m2r
Macaulay2 interface for R
m2r was created at the American Mathematical Society's 2016 Mathematics
Research Community gathering on algebraic statistics. It connects R to a
persistent local or remote Macaulay2 session and leverages mpoly's existing
infrastructure to provide wrappers for commonly used algebraic algorithms in
a way that naturally fits into the R ecosystem, alleviating the need to
learn Macaulay2. m2r provides a flexible framework for computations in the
algebraic statistics community and beyond.
tinymembench
Simple memory benchmark tool
This is a simple memory benchmark program, which tries to measure the peak
bandwidth of sequential memory accesses and the latency of random memory
accesses. Bandwidth is measured by running different assembly code for
the aligned memory blocks and attempting different prefetch strategies.
r-bioc-organismdbi
smooth interfacing of different database packages
The package enables a simple unified interface to several
annotation packages each of which has its own schema by taking
advantage of the fact that each of these packages implements a
select methods.
python3-fhs
python module for using the FHS and XDG basedir paths.
The FHS and XDG basedir specification defines locations for several files.
This module provides functions for accessing those files without requiring the
program to search the filesystem itself.
It provides a convenient way to use configuration from files, with commandline
override functionality.
gobjc++-14-arc-linux-gnu
GNU Objective-C++ compiler for the arc-linux-gnu architecture
This is the GNU Objective-C++ compiler for the arc-linux-gnu architecture,
which compiles Objective-C++ on platforms supported by the gcc compiler.
It uses the gcc backend to generate optimized code.