r-bioc-isoformswitchanalyzer

Identify, Annotate and Visualize Alternative Splicing and

Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data. Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.

r-cran-m2r

Macaulay2 interface for R

m2r was created at the American Mathematical Society's 2016 Mathematics Research Community gathering on algebraic statistics. It connects R to a persistent local or remote Macaulay2 session and leverages mpoly's existing infrastructure to provide wrappers for commonly used algebraic algorithms in a way that naturally fits into the R ecosystem, alleviating the need to learn Macaulay2. m2r provides a flexible framework for computations in the algebraic statistics community and beyond.

tinymembench

Simple memory benchmark tool

This is a simple memory benchmark program, which tries to measure the peak bandwidth of sequential memory accesses and the latency of random memory accesses. Bandwidth is measured by running different assembly code for the aligned memory blocks and attempting different prefetch strategies.

r-bioc-organismdbi

smooth interfacing of different database packages

The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.

python3-fhs

python module for using the FHS and XDG basedir paths.

The FHS and XDG basedir specification defines locations for several files. This module provides functions for accessing those files without requiring the program to search the filesystem itself. It provides a convenient way to use configuration from files, with commandline override functionality.

gobjc++-14-arc-linux-gnu

GNU Objective-C++ compiler for the arc-linux-gnu architecture

This is the GNU Objective-C++ compiler for the arc-linux-gnu architecture, which compiles Objective-C++ on platforms supported by the gcc compiler. It uses the gcc backend to generate optimized code.