multiqc
output integration for RNA sequencing across tools and samples
The sequencing of DNA or RNA with current high-throughput technologies
involves an array of tools and these are applied over a range of samples.
It is easy to loose oversight. And gathering the data and forwarding
them in a readable manner to the individuals who took the samples is
a challenge for a tool in itself. Well. Here it is.
MultiQC aggregates the output of multiple tools into a single report.
r-bioc-deseq
GNU R differential gene expression analysis
BioConductor package to estimate variance-mean dependence in count data from
high-throughput sequencing assays and test for differential
expression based on a model using the negative binomial
distribution.
r-cran-kmsurv
data sets for GNU R from Klein and Moeschberger (1997), Survival Analysis
Data sets and functions for Klein and Moeschberger (1997),
"Survival Analysis, Techniques for Censored and Truncated
Data", Springer.
libdvdread8
library for reading DVDs
libdvdread provides the functionality that is required to access many DVDs. It
parses IFO files, reads NAV-blocks, and performs CSS authentication and
descrambling.
libopencl-clang10
thin wrapper for clang
r-bioc-nanostringqcpro
processing and QA for NanoString mRNA expression data
NanoStringQCPro provides a set of quality metrics that can
be used to assess the quality of NanoString mRNA gene
expression data -- i.e. to identify outlier probes and outlier
samples. It also provides different background subtraction and
normalization approaches for this data. It outputs suggestions
for flagging samples/probes and an easily sharable html quality
control output.