jellyfish1

count k-mers in DNA sequences

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

libgnatcoll-xref17.0.2017

GNATColl, general purpose Ada library (XRef runtime)

liblog4ada3

Ada library for flexible logging (runtime)

libphp-pclzip

transitional dummy package

python-zope.server

Zope Server (Web and FTP)

libgnat-5-dbg-powerpc-cross

runtime for applications compiled with GNAT (debugging symbols)