mindthegap

performs detection and assembly of DNA insertion variants in NGS read datasets

Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. It takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gaps between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file.

mindthegap-examples

optional scripts and example resources for mindthegap

Designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome. it takes as input a set of reads and a reference genome. It outputs two sets of FASTA sequences: one is the set of breakpoints of detection insertion sites, the other is the set of assembled insertions for each breakpoint. MindTheGap can also be used as a genome assembly finishing tool. It can fill the gap between a set of input contigs without any a priori on their relative order and orientation. It outputs the results in gfa file. Please note that this package is meant to accommodate the mindthegap package and only acts as example to how this package can be utilised.

live-task-non-free-firmware-pc

selection of oft-used non-free-firmware shipped on live systems

Provides non-free-firmware packages for Debian live systems.

python3-shtab

Automagic shell tab completion for Python CLI applications

Automatically generate shell tab completion scripts for Python CLI apps. shtab processes an argparse.ArgumentParser object to generate a tab completion script for your shell.

libolm3

implementation of the Double Ratchet cryptographic ratchet in C++

Olm is an implementation of the Double Ratchet cryptographic ratchet described by https://whispersystems.org/docs/specifications/doubleratchet/, written in C and C++11 and exposed as a C API.

libgnustep-base1.28

GNUstep Base library

The GNUstep Base Library is a powerful fast library of general-purpose, non-graphical Objective C classes, inspired by the OpenStep API but implementing Apple and GNU additions to the API as well. It includes for example classes for unicode strings, arrays, dictionaries, sets, byte streams, typed coders, invocations, notifications, notification dispatchers, scanners, tasks, files, networking, threading, remote object messaging support (distributed objects), event loops, loadable bundles, attributed unicode strings, xml, mime, user defaults.