trf-examples

locate and display tandem repeats in DNA sequences (examples)

A tandem repeat in DNA is two or more adjacent, approximate copies of a pattern of nucleotides. Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. In order to use the program, the user submits a sequence in FASTA format. There is no need to specify the pattern, the size of the pattern or any other parameter. The output consists of two files: a repeat table file and an alignment file. The repeat table, viewable in a web browser, contains information about each repeat, including its location, size, number of copies and nucleotide content. Clicking on the location indices for one of the table entries opens a second browser page that shows an alignment of the copies against a consensus pattern. The program is very fast, analyzing sequences on the order of .5Mb in just a few seconds. Submitted sequences may be of arbitrary length. Repeats with pattern size in the range from 1 to 2000 bases are detected.

minc-tools

MNI medical image format tools

This package contains tools to manipulate MINC files.
Miro showing Mioremi Lions channel

miro

GTK+ based RSS video aggregator

mknfonts.tool

Create nfont packages for GNUstep

This doesn't completely automate the process of creating nfont-packages, but it can do most of the bulk work for you.

mairix

indexes and searches locally-stored email

mairix is a program for indexing and searching email messages stored offline on your computer. mairix supports the Maildir, MH folders, and mbox formats.
Create tagged images for Etherboot or Netboot

mknbi

Create tagged images for Etherboot or Netboot

With mknbi you can create tagged images for Etherboot. Tagged images are data files, which contain the necessary files for booting up (kernel+root for Linux, kernel+minifs for DOS, ...) bundled together with a special format.