ssake

genomics application for assembling millions of very short DNA sequences

The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.

mcstas-manuals

Neutron ray-trace simulation - documentation

McStas is a tool for carrying out Monte Carlo ray-tracing simulations of neutron scattering instruments with high complexity and precision. The simulations can compute all aspects of the performance of instruments and can thus be used to optimize the use of existing equipment, design new instrumentation, and carry out virtual experiments for e.g. training, experimental planning or data analysis.

python3-plumbum

library for writing shell script-like programs in Python 3

python-plumbum provides shell-like syntax and handy shortcuts for writing shell script one-liners in Python using shell combinators. It supports local and remote command execution (over SSH), local and remote file-system paths, easy working-directory and environment manipulation and a programmatic Command-Line Interface (CLI) application toolkit.

puppet-module-swift

Puppet module for OpenStack Swift

Puppet lets you centrally manage every important aspect of your system using a cross-platform specification language that manages all the separate elements normally aggregated in different files, like users, cron jobs, and hosts, along with obviously discrete elements like packages, services, and files.

pkg-js-tools

collection of tools to aid packaging Node modules in Debian

The Debian JavaScript Maintainers work on packaging JavaScript libraries for Debian. This collection contains tools which help the tam with day-to-day work.

puppet-module-tempest

Puppet module for OpenStack Tempest

Puppet lets you centrally manage every important aspect of your system using a cross-platform specification language that manages all the separate elements normally aggregated in different files, like users, cron jobs, and hosts, along with obviously discrete elements like packages, services, and files.