pscan-chip
ChIP-based identifcation of TF binding sites
Regulation of transcription is one of the main check points of gene
expression regulation and plays a key role in fundamental processes like
cellular differentiation and dynamic molecular responses to stimuli The
transcriptional activity of genes is finely regulated by the interaction
of sequence elements on the DNA (transcription factor binding sites or
TFBSs) and particular proteins called Transcription Factors (TFs).
,
TFBSs are usually clustered in specific regulatory genomic regions
called promoters and enhancers. TFs usually recognize TFBSs in a loose
sequence specific fashion but there is no computational way to determine
if any given sequence motif on the DNA is actually bound in-vivo by a
TF, even when the motif is an istance of the sequences typically bound
by the TF itself.
liblwres161
Lightweight Resolver Library used by BIND
The Berkeley Internet Name Domain (BIND) implements an Internet domain
name server. BIND is the most widely-used name server software on the
Internet, and is supported by the Internet Software Consortium, www.isc.org.
pscan-tfbs
search for transcription factor binding sites
Pscan finds Over-represented Transcription Factor Binding Site Motifs in
Sequences from Co-Regulated or Co-Expressed Genes.
soapsnp
resequencing utility that can assemble consensus sequence of genomes
For getting ideas on the cause of diseases or their response to
therapy, and for understanding either for a particular patient,
doctors around the globe are starting to look at the genes or the
whole genome and how that sequence is different from a healthy /
well responding individual.
libsuper-csv-java
Super CSV library for Java
It is highly configurable, and supports reading and writing with POJOs,
Maps and Lists. It also has support for deep-mapping and index-based
mapping with POJOs, using the powerful Dozer extension.
python3-tempest-horizon
OpenStack Integration Test Suite - Horizon plugin transitional package
Tempest is a set of integration tests to be run against a live Openstack
cluster in order to make sure that all components are working as expected.
Tempest will start and stop virtual machine in order to check that your
cloud is working as expected.