libgdbm6t64

GNU dbm database routines (runtime version)

GNU dbm ('gdbm') is a library of database functions that use extendible hashing and works similarly to the standard UNIX 'dbm' functions.

r-cran-permute

R functions for generating restricted permutations of data

Implements a set of restricted permutation designs for freely exchangeable, line transects (time series), and spatial grid designs plus permutation of blocks (groups of samples). ‘permute’ also allows split-plot designs, in which the whole-plots or split-plots or both can be freely-exchangeble or one of the restricted designs. The permute package is modelled after the permutation schemes of Canoco 3.1 by Cajo ter Braak.

python3-matplotlib

Python based plotting system in a style similar to Matlab

Matplotlib is a pure Python plotting library designed to bring publication quality plotting to Python with a syntax familiar to Matlab users. All of the plotting commands in the pylab interface can be accessed either via a functional interface familiar to Matlab users or an object oriented interface familiar to Python users.

cosign

Code signing/transparency for containers and binaries (program)

Signing OCI containers (and other artifacts) using Sigstore

python3-all

package depending on all supported Python 3 runtime versions

The package currently depends on python3.13. In the future, dependencies on jython (Python for a JVM) and ironpython (Python for Mono) may be added.

python3-dendropy

DendroPy Phylogenetic Computing Library (Python 3)

DendroPy is a Python library for phylogenetic computing. It provides classes and functions for the simulation, processing, and manipulation of phylogenetic trees and character matrices, and supports the reading and writing of phylogenetic data in a range of formats, such as NEXUS, NEWICK, NeXML, Phylip, FASTA, etc. Application scripts for performing some useful phylogenetic operations, such as data conversion and tree posterior distribution summarization, are also distributed and installed as part of the library. DendroPy can thus function as a stand-alone library for phylogenetics, a component of more complex multi-library phyloinformatic pipelines, or as a scripting “glue” that assembles and drives such pipelines.