libgloo-cuda-0
Collective communications library (shared object)
Gloo is a collective communications library. It comes with a number of
collective algorithms useful for machine learning applications. These
include a barrier, broadcast, and allreduce.
python3-django-filters
filter Django QuerySets based on user selections (Python3)
Django-filter is a generic, reusable application to alleviate some of the more
mundane bits of view code. Specifically allowing the users to filter down a
queryset based on a model’s fields and displaying the form to let them do this.
smrtanalysis
software suite for single molecule, real-time sequencing
SMRT® Analysis is a powerful, open-source bioinformatics software suite
available for analysis of DNA sequencing data from Pacific Biosciences’
SMRT technology. Users can choose from a variety of analysis protocols that
utilize PacBio® and third-party tools. Analysis protocols include de novo
genome assembly, cDNA mapping, DNA base-modification detection, and
long-amplicon analysis to determine phased consensus sequences.
python3-torch-cuda
Tensors and Dynamic neural networks in Python (Python Interface)
PyTorch is a Python package that provides two high-level features:
sift
predicts if a substitution in a protein has a phenotypic effect
SIFT is a sequence homology-based tool that sorts intolerant from tolerant
amino acid substitutions and predicts whether an amino acid substitution
in a protein will have a phenotypic effect. SIFT is based on the premise
that protein evolution is correlated with protein function. Positions
important for function should be conserved in an alignment of the protein
family, whereas unimportant positions should appear diverse in an alignment.