python3-airr

Data Representation Standard library for antibody and TCR sequences

This package provides a library by the AIRR community to for describing, reporting, storing, and sharing adaptive immune receptor repertoire (AIRR) data, such as sequences of antibodies and T cell receptors (TCRs). Some specific efforts include: * The MiAIRR standard for describing minimal information about AIRR datasets, including sample collection and data processing information. * Data representations (file format) specifications for storing large amounts of annotated AIRR data. * APIs for exposing a common interface to repositories/databases containing AIRR data. * A community standard for software tools which will allow conforming tools to gain community recognition.

lucy

DNA sequence quality and vector trimming tool

Lucy is a utility that prepares raw DNA sequence fragments for sequence assembly, possibly using the TIGR Assembler. The cleanup process includes quality assessment, confidence reassurance, vector trimming and vector removal. The primary advantage of Lucy over other similar utilities is that it is a fully integrated, stand alone program.

php-db

Database Abstraction Layer

DB is a database abstraction layer providing: * an OO-style query API * portability features that make programs written for one DBMS work with other DBMS's * a DSN (data source name) format for specifying database servers * prepare/execute (bind) emulation for databases that don't support it natively * a result object for each query response * portable error codes * sequence emulation * sequential and non-sequential row fetching as well as bulk fetching * formats fetched rows as associative arrays, ordered arrays or objects * row limit support * transactions support * table information interface * DocBook and phpDocumentor API documentation

libconfig-model-perl

module for describing and editing configuration data

Config::Model is a Perl framework that enables project developers to provide an interactive configuration system for their software. It supports various frontend interfaces (graphical, curses-based or plain terminal) to users. It handles configuration files semantically rather than syntactically, meaning that developers can specify the structure and constraints of the data along with a mechanism to read and write the files.

ewf-tools

collection of tools for reading and writing EWF files

Libewf is a library with support for reading and writing the Expert Witness Compression Format (EWF). This library allows you to read media information of EWF files in the SMART (EWF-S01) format and the EnCase (EWF-E01) format. It supports files created by EnCase 1 to 6, linen and FTK Imager. The libewf is useful for forensics investigations.

libewf2

library with support for Expert Witness Compression Format

Libewf is a library with support for reading and writing the Expert Witness Compression Format (EWF). This library allows you to read media information of EWF files in the SMART (EWF-S01) format and the EnCase (EWF-E01) format. It supports files created by EnCase 1 to 6, linen and FTK Imager. The libewf is useful for forensics investigations.