python3-airr
Data Representation Standard library for antibody and TCR sequences
This package provides a library by the AIRR community to for describing,
reporting, storing, and sharing adaptive immune receptor repertoire
(AIRR) data, such as sequences of antibodies and T cell receptors
(TCRs). Some specific efforts include:
* The MiAIRR standard for describing minimal information about AIRR
datasets, including sample collection and data processing information.
* Data representations (file format) specifications for storing large
amounts of annotated AIRR data.
* APIs for exposing a common interface to repositories/databases
containing AIRR data.
* A community standard for software tools which will allow conforming
tools to gain community recognition.
lucy
DNA sequence quality and vector trimming tool
Lucy is a utility that prepares raw DNA sequence fragments for sequence
assembly, possibly using the TIGR Assembler. The cleanup process includes
quality assessment, confidence reassurance, vector trimming and vector
removal. The primary advantage of Lucy over other similar utilities is
that it is a fully integrated, stand alone program.
php-db
Database Abstraction Layer
DB is a database abstraction layer providing:
* an OO-style query API
* portability features that make programs written for one DBMS work with
other DBMS's
* a DSN (data source name) format for specifying database servers
* prepare/execute (bind) emulation for databases that don't support it
natively
* a result object for each query response
* portable error codes
* sequence emulation
* sequential and non-sequential row fetching as well as bulk fetching
* formats fetched rows as associative arrays, ordered arrays or objects
* row limit support
* transactions support
* table information interface
* DocBook and phpDocumentor API documentation
libconfig-model-perl
module for describing and editing configuration data
Config::Model is a Perl framework that enables project developers to provide
an interactive configuration system for their software. It supports various
frontend interfaces (graphical, curses-based or plain terminal) to users. It
handles configuration files semantically rather than syntactically, meaning
that developers can specify the structure and constraints of the data along
with a mechanism to read and write the files.
ewf-tools
collection of tools for reading and writing EWF files
Libewf is a library with support for reading and writing the Expert Witness
Compression Format (EWF).
This library allows you to read media information of EWF files in the SMART
(EWF-S01) format and the EnCase (EWF-E01) format. It supports files created
by EnCase 1 to 6, linen and FTK Imager. The libewf is useful for forensics
investigations.
libewf2
library with support for Expert Witness Compression Format
Libewf is a library with support for reading and writing the Expert Witness
Compression Format (EWF).
This library allows you to read media information of EWF files in the SMART
(EWF-S01) format and the EnCase (EWF-E01) format. It supports files created
by EnCase 1 to 6, linen and FTK Imager. The libewf is useful for forensics
investigations.