libgudhi-examples
Example programs for the GUDHI library
The GUDHI library is a generic open source C++ library for
Topological Data Analysis (TDA) and Higher Dimensional Geometry
Understanding. The library offers state-of-the-art data structures
and algorithms to construct simplicial complexes and compute
persistent homology.
libmutter-11-0
window manager library from the Mutter window manager
Mutter is a Wayland display server and X11 window manager and
compositor library. It contains functionality related to, among other
things, window management, window compositing, focus tracking, workspace
management, keybindings and monitor configuration.
mutter-11-tests
Tests for GNOME's window manager library
Mutter is a Wayland display server and X11 window manager and
compositor library. It contains functionality related to, among other
things, window management, window compositing, focus tracking, workspace
management, keybindings and monitor configuration.
r-bioc-biomformat
GNU R interface package for the BIOM file format
This is an R package for interfacing with the BIOM format. This package
includes basic tools for reading biom-format files, accessing and
subsetting data tables from a biom object (which is more complex than a
single table), as well as limited support for writing a biom-object back
to a biom-format file. The design of this API is intended to match the
Python API and other tools included with the biom-format project, but
with a decidedly "R flavor" that should be familiar to R users. This
includes S4 classes and methods, as well as extensions of common core
functions/methods.
r-bioc-monocle
clustering, differential expression, and trajectory analysis for RNA-Seq
Monocle performs differential expression and time-series analysis
for single-cell expression experiments. It orders individual cells
according to progress through a biological process, without knowing ahead
of time which genes define progress through that process. Monocle also
performs differential expression analysis, clustering, visualization, and
other useful tasks on single cell expression data. It is designed to work
with RNA-Seq and qPCR data, but could be used with other types as well.