computes alignments of amino acid and nucleotide sequences

neobio

computes alignments of amino acid and nucleotide sequences

Library and graphical user interface for pairwise sequence alignments. Implementation of the dynamic programming methods of Needleman & Wunsch (global alignment) and Smith & Waterman (local alignment).

python-lhapdf

Python Bindings for LHAPDF

LHAPDF provides a unified and easy to use interface to modern PDF sets. It is designed to work not only with individual PDF sets but also with the more recent multiple "error" sets. It can be viewed as the successor to PDFLIB, incorporating many of the older sets found in the latter, including pion and photon PDFs. In LHAPDF the computer code and input parameters/grids are separated thus allowing more easy updating and no limit to the expansion possibilities.
modern submarine tactical simulator

openssn

modern submarine tactical simulator

OpenSSN is a submarine simulation (subsim) which tries to emulate the behaviour of modern submarines. The player is placed in command of a submarine and is able to move about in a deep ocean environment.

flactag

Tagger for whole-album FLAC files using data from MusicBrainz

Tagger for whole-album FLAC files with embedded CUE sheets. Data for the tags is retrieved from the MusicBrainz service. Tags are written as VORBIS comments or standalone CUESHEET files, and the application has the ability to rename a file based on the tags using a user-specified template.

python-d2to1

Python support for distutils2-like setup.cfg files as package metadata

d2to1 (the 'd' is for 'distutils') allows using distutils2-like setup.cfg files for a package's metadata with a distribute/setuptools setup.py script. It works by providing a distutils2-formatted setup.cfg file containing all of a package's metadata, and a very minimal setup.py which will slurp its arguments from the setup.cfg.

clojure1.6

Lisp dialect for the JVM

Clojure is a dynamic programming language that targets the Java Virtual Machine. It is designed to be a general-purpose language, combining the approachability and interactive development of a scripting language with an efficient and robust infrastructure for multithreaded programming. Clojure is a compiled language - it compiles directly to JVM bytecode, yet remains completely dynamic. Every feature supported by Clojure is supported at runtime. Clojure provides easy access to the Java frameworks, with optional type hints and type inference, to ensure that calls to Java can avoid reflection.