sphde-utils
Shared Persistent Heap Data Environment library utilities
SPHDE is composed of two major software layers: The Shared Address Space (SAS)
layer provides the basic services for a shared address space and transparent,
persistent storage. The Shared Persistent Heap (SPH) layer organizes blocks of
SAS storage into useful functions for storing and retrieving data.
spaced
alignment-free sequence comparison using spaced words
Spaced (Words) is a new approach to alignment-free sequence
comparison. While most alignment-free algorithms compare the
word-composition of sequences, spaced uses a pattern of care and
don't care positions. The occurrence of a spaced word in a sequence
is then defined by the characters at the match positions only, while
the characters at the don't care positions are ignored. Instead of
comparing the frequencies of contiguous words in the input sequences,
this new approach compares the frequencies of the spaced words according
to the pre-defined pattern. An information-theoretic distance measure
is then used to define pairwise distances on the set of input sequences
based on their spaced-word frequencies. Systematic test runs on real and
simulated sequence sets have shown that, for phylogeny reconstruction,
this multiple-spaced-words approach is far superior to the classical
alignment-free approach based on contiguous word frequencies.
libelpa4
Eigenvalue SoLvers for Petaflop-Applications
sprai
single-pass sequencing read accuracy improver
Sprai is a tool to correct sequencing errors in single-pass reads for
de novo assembly. It is originally designed for correcting sequencing
errors in single-molecule DNA sequencing reads, especially in Continuous
Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is
not maximizing the accuracy of error-corrected reads. Instead, Sprai aims
at maximizing the continuity (i.e., N50 contig length) of assembled contigs
after error correction.
ros-nav-msgs
Messages relating to Robot OS nav, definitions
This package is part of Robot OS (ROS), and provides the common
messages used to interact with the 'nav' https://wiki.ros.org/navigation
stack.
r-cran-circular
GNU R Circular Statistics
Circular Statistics, from "Topics in circular Statistics" (2001) S. Rao
Jammalamadaka and A. SenGupta, World Scientific.