Phylogenetic estimation using Maximum Likelihood

phyml

Phylogenetic estimation using Maximum Likelihood

PhyML is a software that estimates maximum likelihood phylogenies from alignments of nucleotide or amino acid sequences. It provides a wide range of options that were designed to facilitate standard phylogenetic analyses. The main strengths of PhyML lies in the large number of substitution models coupled to various options to search the space of phylogenetic tree topologies, going from very fast and efficient methods to slower but generally more accurate approaches. It also implements two methods to evaluate branch supports in a sound statistical framework (the non-parametric bootstrap and the approximate likelihood ratio test).
interface for mathematical applications

cantor

interface for mathematical applications

Cantor is an application to allow you to you use your favorite mathematical applications from within an elegant worksheet interface. It provides dialogs to assist with common tasks and allows you to share your worksheets with others.
GNU R core of statistical computation and graphics system

r-base-core

GNU R core of statistical computation and graphics system

R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files.
R shell with simple plot

r-recommended

GNU R collection of recommended packages [metapackage]

R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files.
Sophisticated CD/DVD burning application

k3b

Sophisticated CD/DVD burning application

K3b is a full-featured CD/DVD/Blu-ray burning and ripping application. It supports a variety of project types as well as copying of optical media, burning of different types of images, and ripping Audio CDs, Video CDs, and Video DVDs. Its convenient user interface is targeted at all audiences, trying to be as simple as possible for novice users, while also providing all features an advanced user might need.
algebraic graphing calculator for small touch based interfaces

kalgebramobile

algebraic graphing calculator for small touch based interfaces

KAlgebra is a algebraic graphing calculator with support for 3D graphing and MathML markup language. This is the version for small touch based interfaces