hyphy-mpi
Hypothesis testing using Phylogenies (MPI version)
HyPhy is an open-source software package for the analysis of genetic
sequences using techniques in phylogenetics, molecular evolution, and
machine learning. It features a complete graphical user interface (GUI)
and a rich scripting language for limitless customization of analyses.
Additionally, HyPhy features support for parallel computing environments
(via message passing interface) and it can be compiled as a shared
library and called from other programming environments such as Python or
R. Continued development of HyPhy is currently supported in part by an
NIGMS R01 award 1R01GM093939.
jarwrapper
Run executable Java .jar files
Jarwrapper sets up binfmt-misc to run executable jar files
using the installed java runtime.
javahelper
Helper scripts for packaging Java programs
Javahelper contains several scripts which help in packaging
Java programs.
mothur
sequence analysis suite for research on microbiota
Mothur seeks to develop a single piece of open-source, expandable
software to fill the bioinformatics needs of the microbial ecology
community. It has incorporated the functionality of dotur, sons,
treeclimber, s-libshuff, unifrac, and much more. In addition to improving
the flexibility of these algorithms, a number of other features including
calculators and visualization tools were added.
python3-sniffio
detect which async Python library is in use (Python3 version)
Python library that support multiple async packages (like Trio, asyncio,
etc) need to know which is in use. This library provides this information.
r-cran-munsell
Utilities for using Munsell colors
Provides easy access to, and manipulation of, the Munsell colors.
Provides a mapping between Munsell's original notation
(e.g., "5R 5/10") and hexadecimal strings suitable for use
directly in R graphics. Also provides utilities to explore slices
through the Munsell color tree, to transform Munsell colors and
display color palettes.