andi

Efficient Estimation of Evolutionary Distances

This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compute full alignments, it is so efficient that it scales even up to thousands of bacterial genomes.

javacc5

Parser generator for use with Java

Java Compiler-Compiler (JavaCC) is (according to sun) "the most popular parser generator" for use with Java [tm] applications.

libisospec++2

Isotopic fine structure calculator (C++ runtime)

IsoSpec implements an algorithm for fast computation of isotopologues of chemical substances that can alternate between joint probability and peak height threshold.

libboost-signals1.63.0

managed signals and slots library for C++

gcc-8-multilib-mipsisa32r6el-linux-gnu

GNU C compiler (multilib support) (cross compiler for mipsr6el architecture)

libghmm1

General Hidden-Markov-Model library

The General Hidden Markov Model Library (GHMM) is a C library with additional Python3 bindings implementing a wide range of types of Hidden Markov Models and algorithms: discrete, continuous emissions, basic training, HMM clustering, HMM mixtures.