kallisto-examples

near-optimal RNA-Seq quantification (example data)

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

libisc-export1100

Exported ISC Shared Library

libipset3

library for IP sets

IP sets are a framework inside the Linux 2.4.x and 2.6.x kernel which can be administered by the ipset(8) utility. Depending on the type, currently an IP set may store IP addresses, (TCP/UDP) port numbers or IP addresses with MAC addresses in a way which ensures lightning speed when matching an entry against a set.

libpulse-mainloop-glib0

PulseAudio client libraries (glib support)

PulseAudio, previously known as Polypaudio, is a sound server for POSIX and WIN32 systems. It is a drop in replacement for the ESD sound server with much better latency, mixing/re-sampling quality and overall architecture.

libroscpp0d

Robot OS client library

libtest-www-mechanize-catalyst-perl

module for automated testing for Catalyst applications

Test::WWW::Mechanize::Catalyst is a Perl module that combines the well-known Test::WWW::Mechanize module with the power of Catalyst. It allows developers to easily test their Catalyst applications without starting up a web server; in fact, this module works by passing the HTTP request object directly to Catalyst.