emacs-ocaml-merlin

editor service to develop in OCaml (emacs files)

This package provides an editor service for advanced integrated development environment (IDE) in the OCaml language both for the vim and emacs editors.

python3-biopython

Python3 library for bioinformatics

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

r-cran-bios2cor

GNU R from Biological Sequences and Simulations to Correlation

Analysis Utilities for computation and analysis of correlation/covariation in multiple sequence alignments and in side chain motions during molecular dynamics simulations. Features include the computation of correlation/covariation scores using a variety of scoring functions between either sequence positions in alignments or side chain dihedral angles in molecular dynamics simulations and utilities to analyze the correlation/covariation matrix through a variety of tools including network representation and principal components analysis. In addition, several utility functions are based on the R graphical environment to provide friendly tools for help in data interpretation. Examples of sequence covariation analysis are provided in: (1) Pele J, Moreau M, Abdi H, Rodien P, Castel H, Chabbert M (2014) <doi:10.1002/prot.24570> and (2) Taddese B, Deniaud M, Garnier A, Tiss A, Guissouma H, Abdi H, Henrion D, Chabbert M (2018) <doi: 10.1371/journal.pcbi.1006209>. An example of side chain correlated motion analysis is provided in: Taddese B, Garnier A, Abdi H, Henrion D, Chabbert M (2020) <doi: 10.1038/s41598-020-72766- 1>. This work was supported by the French National Research Agency (Grant number: ANR-11-BSV2-026) and by GENCI (Grant number: 100567).

r-cran-estimability

GNU R package providing tools for determining estimability of linear functions

The estimability package is a GNU R package providing tools for determining estimability of linear functions of regression coefficients, and 'epredict' methods that handle non-estimable cases correctly.

r-cran-fontawesome

GNU R support of 'Font Awesome' Icons

Easily and flexibly insert 'Font Awesome' icons into 'R Markdown' documents and 'Shiny' apps. These icons can be inserted into HTML content through inline 'SVG' tags or 'i' tags. There is also a utility function for exporting 'Font Awesome' icons as 'PNG' images for those situations where raster graphics are needed.

python3-plaster

Python multi-format configuration file loader interface - Python 3.x module

plaster is a loader interface around arbitrary config file formats. It exists to define a common API for applications to use when they wish to load configuration settings.