nodejs
evented I/O for V8 javascript - runtime executable
Node.js is a platform built on Chrome's JavaScript runtime for easily
building fast, scalable network applications. Node.js uses an
event-driven, non-blocking I/O model that makes it lightweight and
efficient, perfect for data-intensive real-time applications that run
across distributed devices.
r-bioc-dexseq
GNU R inference of differential exon usage in RNA-Seq
The package is focused on finding differential exon usage
using RNA-seq exon counts between samples with different
experimental designs. It provides functions that allows the
user to make the necessary statistical tests based on a model
that uses the negative binomial distribution to estimate the
variance between biological replicates and generalized linear
models for testing. The package also provides functions for the
visualization and exploration of the results.
r-bioc-htsfilter
GNU R filter replicated high-throughput transcriptome sequencing data
This package implements a filtering procedure for
replicated transcriptome sequencing data based on a global
Jaccard similarity index in order to identify genes with low,
constant levels of expression across one or more experimental
conditions.
r-bioc-genomicfeatures
GNU R tools for making and manipulating transcript centric annotations
A set of tools and methods for making and manipulating transcript
centric annotations. With these tools the user can easily download the
genomic locations of the transcripts, exons and cds of a given organism,
from either the UCSC Genome Browser or a BioMart database (more sources
will be supported in the future). This information is then stored in a
local database that keeps track of the relationship between transcripts,
exons, cds and genes. Flexible methods are provided for extracting the
desired features in a convenient format.
r-bioc-go.db
annotation maps describing the entire Gene Ontology
This package is part of BioConductor and provides a set of annotation
maps describing the entire Gene Ontology assembled using data from GO.