r-bioc-alabaster.schemas

Schemas for the Alabaster Framework

Stores all schemas required by various alabaster.* packages. No computation should be performed by this package, as that is handled by alabaster.base. We use a separate package instead of storing the schemas in alabaster.base itself, to avoid conflating management of the schemas with code maintenence.

atomes

atomic-scale 3D modeling toolbox

Atomes is a tool box to analyze (physico-chemical properties calculations), visualize (atoms, bonds, colormaps, measurements, coordination polyedra ...) create (crystal builder, molecular library, surface creation and passivation ...) 3D atomistic models. Atomes offers a workspace capable of handling many projects opened simultaneously. The different projects in the workspace can exchange data: analysis results, atomic coordinates... Atomes also provides an advanced input preparation system for further calculations using well known molecular dynamics codes: Classical MD: DLPOLY and LAMMPS - ab-initio MD: CPMD and CP2K - QM-MM MD: CPMD and CP2K To prepare the input files for these calculations is likely to be the key, and most complicated step towards MD simulations. Atomes offers a user-friendly assistant to help and guide the scientist step by step to achieve this crucial step.

libnvrtc-builtins11.7

CUDA Runtime Compilation (NVIDIA NVRTC Builtins Library)

CUDA Runtime Compilation library (nvrtc) provides an API to compile CUDA-C++ device source code at runtime.

sass-stylesheets-bulma

Sass and CSS framework using flexbox

Bulma is a Sass and CSS framework that provides ready-to-use frontend components that you can easily combine to build responsive web interfaces.

ruby-ipaddr

class to manipulate an IP address in ruby

IPAddr provides a set of methods to manipulate an IP address. Both IPv4 and IPv6 are supported.

r-bioc-gsvadata

Data employed in the vignette of the GSVA package

This package stores the data employed in the vignette of the GSVA package. These data belong to the following publications: - Armstrong et al. Nat Genet 30:41-47, 2002 - Cahoy et al. J Neurosci 28:264-278, 2008 - Carrel and Willard, Nature, 434:400-404, 2005 - Huang et al. PNAS, 104:9758-9763, 2007 - Pickrell et al. Nature, 464:768-722, 2010 - Skaletsky et al. Nature, 423:825-837 - Verhaak et al. Cancer Cell 17:98-110, 2010