bowtie-examples

Examples for bowtie, the ultrafast memory-efficient short read aligner

This package addresses the problem to interpret the results from the latest (2010) DNA sequencing technologies. Those will yield fairly short stretches and those cannot be interpreted directly. It is the challenge for tools like Bowtie to give a chromosomal location to the short stretches of DNA sequenced per run.

tagainijisho-dic-fr

French dictionary files for Tagaini Jisho

Tagaini Jisho is a Japanese dictionary and learning assistant.

libghc-random-shuffle-prof

random shuffle library; profiling libraries

Random shuffle implementation, on immutable lists. Based on "perfect shuffle" implementation by Oleg Kiselyov, available at http://okmij.org/ftp/Haskell/perfect-shuffle.txt

libnet-imap-simple-perl

Perl module to manage an IMAP account

Net::IMAP::Simple provides a simple way to access and manipulate information on Internet Message Access Protocol (IMAP) capable servers. The API is mostly equivalent to Net::POP3, with some additional extensions based on the other features supported in the IMAP standard. This module supports connections via SSL using IO::Socket::SSL (see libio-socket-ssl-perl), over IPv6 using IO::Socket::INET6 (see libio-socket-inet6-perl) and handling messages in various ways (delete or undelete, mark as read or unread, expunge, edit flags, and more).
swiss-army knife for reading and writing XML files

php-xml-serializer

swiss-army knife for reading and writing XML files

libvamsas-client-java

library for phylogenetic tasks

Vamsas, for Visualisation and Analysis of Molecular Sequences, Alignments and Structures is a Java library aiming to facilitate the communication between phylogeny and protein structure communities via the provision of easy to use tools for complex methods.