snap-aligner

Scalable Nucleotide Alignment Program

SNAP is a new sequence aligner that is 3-20x faster and just as accurate as existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 processors, and supports a rich error model that lets it cheaply match reads with more differences from the reference than other tools. This gives SNAP up to 2x lower error rates than existing tools (in some cases) and lets it match larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, duplicate marking, and BAM indexing.

node-wikibase-sdk

functions to query Wikibase instances

JavaScript utility functions to query a Wikibase instance and simplify the returned results.

r-cran-ggfortify

GNU R data visualization tools for statistical analysis results

Unified plotting tools for statistics commonly used, such as GLM, time series, PCA families, clustering and survival analysis. The package offers a single plotting interface for these analysis results and plots in a unified style using 'ggplot2'.

raku-file-find

Get a lazy list of a directory tree

This Raku module allows you to get the contents of a given directory, recursively, depth first.

node-configurable-http-proxy

configurable-on-the-fly HTTP Proxy in Node.js

configurable-http-proxy (CHP) provides you with a way to update and manage a proxy table using a command line interface or REST API. It is a simple wrapper around node-http-proxy. node-http-proxy is an HTTP programmable proxying library that supports websockets and is suitable for implementing components such as reverse proxies and load balancers. By wrapping node-http-proxy, configurable-http-proxy extends this functionality to JupyterHub deployments.

tomcat10-admin

Apache Tomcat 10 - Servlet and JSP engine -- admin web applications

Apache Tomcat implements the Java Servlet and the JavaServer Pages (JSP) specifications from Oracle, and provides a "pure Java" HTTP web server environment for Java code to run.