r-bioc-biomformat
GNU R interface package for the BIOM file format
This is an R package for interfacing with the BIOM format. This package
includes basic tools for reading biom-format files, accessing and
subsetting data tables from a biom object (which is more complex than a
single table), as well as limited support for writing a biom-object back
to a biom-format file. The design of this API is intended to match the
Python API and other tools included with the biom-format project, but
with a decidedly "R flavor" that should be familiar to R users. This
includes S4 classes and methods, as well as extensions of common core
functions/methods.
r-bioc-monocle
clustering, differential expression, and trajectory analysis for RNA-Seq
Monocle performs differential expression and time-series analysis
for single-cell expression experiments. It orders individual cells
according to progress through a biological process, without knowing ahead
of time which genes define progress through that process. Monocle also
performs differential expression analysis, clustering, visualization, and
other useful tasks on single cell expression data. It is designed to work
with RNA-Seq and qPCR data, but could be used with other types as well.
libgnatcoll-python3-2
Ada binding to the Python3 language (runtime)
The GNAT Component Collection deals with: module tracing, efficient
file IO, static string searching (Boyer-Moore), e-mails and
mailboxes, Ravenscar tasking profiles, storage pools, JSON, logging,
shell scripting. Components relying on external dependencies are
distributed in separate packages.
libgnatcoll-syslog4
Ada binding for syslog journals (runtime)
The GNAT Component Collection deals with: module tracing, efficient
file IO, static string searching (Boyer-Moore), e-mails and
mailboxes, Ravenscar tasking profiles, storage pools, JSON, logging,
shell scripting. Components relying on external dependencies are
distributed in separate packages.
libgnatcoll-zlib3
Ada binding for Zlib compression (runtime)
The GNAT Component Collection deals with: module tracing, efficient
file IO, static string searching (Boyer-Moore), e-mails and
mailboxes, Ravenscar tasking profiles, storage pools, JSON, logging,
shell scripting. Components relying on external dependencies are
distributed in separate packages.
libgnatcoll-sqlite21
Ada library accessing SQLite databases (runtime)
The gnatcoll-db library allows Ada programs to send SQL queries to
SQLite or PostGreSQL databases.