r-bioc-biomformat

GNU R interface package for the BIOM file format

This is an R package for interfacing with the BIOM format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the Python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.

r-bioc-monocle

clustering, differential expression, and trajectory analysis for RNA-Seq

Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.

libgnatcoll-python3-2

Ada binding to the Python3 language (runtime)

The GNAT Component Collection deals with: module tracing, efficient file IO, static string searching (Boyer-Moore), e-mails and mailboxes, Ravenscar tasking profiles, storage pools, JSON, logging, shell scripting. Components relying on external dependencies are distributed in separate packages.

libgnatcoll-syslog4

Ada binding for syslog journals (runtime)

The GNAT Component Collection deals with: module tracing, efficient file IO, static string searching (Boyer-Moore), e-mails and mailboxes, Ravenscar tasking profiles, storage pools, JSON, logging, shell scripting. Components relying on external dependencies are distributed in separate packages.

libgnatcoll-zlib3

Ada binding for Zlib compression (runtime)

The GNAT Component Collection deals with: module tracing, efficient file IO, static string searching (Boyer-Moore), e-mails and mailboxes, Ravenscar tasking profiles, storage pools, JSON, logging, shell scripting. Components relying on external dependencies are distributed in separate packages.

libgnatcoll-sqlite21

Ada library accessing SQLite databases (runtime)

The gnatcoll-db library allows Ada programs to send SQL queries to SQLite or PostGreSQL databases.